Type in aligned sequence data (FASTA format only)
Sequence type:
Substitution Model:
Frequencies:
Rate parameters:
I+G Parameters:
Type in a tree (Newick format only)
If a tree is not provided, the maximum likelihood (ML) tree will be computed from the input sequences and used with the SpartaABC algorithm.
MSA Program: MAFFT (default) PRANK
Maximal INDEL Rate value to search for: 0.05
SpartaABC examines different values of the IR parameter. The IR parameter represents the ratio of indel to substitution events. The default value of 0.05 represents a relatively high indel rate ratio. If you suspect your input to contain many indel events, you can increase this limit up to 0.1. Please take into account that this prolongs the runtime of the algorithm.
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